課程資訊
課程名稱
植物基因體學
Plant Genomics 
開課學期
104-1 
授課對象
生物資源暨農學院  農藝學系  
授課教師
董致韡 
課號
Agron5056 
課程識別碼
621 U6450 
班次
 
學分
全/半年
半年 
必/選修
選修 
上課時間
星期五6,7,8(13:20~16:20) 
上課地點
 
備註
農藝館316與劉力瑜、黃永芬合開
總人數上限:16人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1041Agron5056_ 
課程簡介影片
 
核心能力關聯
核心能力與課程規劃關聯圖
課程大綱
為確保您我的權利,請尊重智慧財產權及不得非法影印
課程概述

Genome science has been one of the most blooming sciences in the past decade. The complete genome sequences of the dicot model plant, Arabidopsis, and of the monocot crops such as rice, sorghum and maize are released. In addition, many crops and plants are undergone sequencing. The genomic information provides various research methodologies and speeds up traditional researches. This course will emphasize on genetic mapping, physical mapping, and genome sequencing and annotating to dissect plant genomes. Consequently, this course will introduce the applications of genomics in positional cloning, gene expression, comparative mapping, genetic variation and so on. 

課程目標
Organization and Structure of Genomes
Assemblies of Genetic and Physical Maps
Genome Sequencing Projects
Plant Functional Genomics
Bioinformatics-Sequence alignment, comparative genomics
SNPs and Variation
 
課程要求
待補 
預期每週課後學習時數
 
Office Hours
 
指定閱讀
待補 
參考書目
Benfey P.N., and Protopapas A.D., “Genomics” Pearson Education, USA, 2005
Cullis C.A. “Plant Genomics and Proteomics”, John Wiley & Son (Asia), USA, 2004
 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
第1週
9/18  Introduction of Plant Genomics: Organization and Structure of Genomes (Huang) 
第2週
9/25  Next Generation Sequencing (NGS) in Plant Genomics (Tung) 
第3週
10/02  Genome organisation and Linkage Map construction (Huang) 
第4週
10/09  放假 
第5週
10/16  Sequence Alignment (Liu) 
第6週
10/23  Sequence Alignment: Lab (Liu) 
第7週
10/30  Genome Sequencing Methods and Strategies (Huang) 
第8週
11/06  Genesis of New Genes (Huang) 
第9週
11/13  Global Gene Expression (Liu) 
第10週
11/20  Global Gene Expression: Lab (Liu) 
第11週
11/27  Systems Biology: Gene Modules and Network + WGCNA Lab (Liu) 
第12週
12/04  Students' presentation (Huang) 
第13週
12/11  Genome Variation (Tung) 
第14週
12/18  Comparative Genomics (Tung) 
第15週
12/25  The Application of NGS data on Plant Genome Studies: Lab (Wei Fu-Jin) 
第16週
1/01  放假 
第17週
1/08  Exam (Tung)